Hemocytes transcriptome study

Hemocytes transcriptome profile of the Chinese mitten crab ...

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The hemocytes are classified into hyalinocytes, semigranulocytes, and granulocytes; and limited transcriptomics research is available. In this study, the transcriptome of the crab E. sinensis hemocytes was characterized. A total of 14,380,229 clean reads representing a total of …

Hemocytes transcriptome profile of the Chinese mitten crab ...

Sequencing and De Novo Analysis of the Hemocytes ...

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Sequencing and De Novo Analysis of the Hemocytes Transcriptome in Litopenaeus vannamei Response to White Spot Syndrome ... data for better understanding the hemocytes transcriptome of L. vannamei infected with WSSV. Figure 1. ... changes on how to investigate the functional complexity of the transcriptome. In the present study, ...

Sequencing and De Novo Analysis of the Hemocytes ...

Sequencing and De Novo Analysis of the Hemocytes ...

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Background White spot syndrome virus (WSSV) is a causative pathogen found in most shrimp farming areas of the world and causes large economic losses to the shrimp aquaculture. The mechanism underlying the molecular pathogenesis of the highly virulent WSSV remains unknown. To better understand the virus-host interactions at the molecular level, the transcriptome profiles in hemocytes …

Sequencing and De Novo Analysis of the Hemocytes ...

Transcriptome analysis of the unfolded protein response in ...

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In this study, we performed a transcriptome analysis of the UPR-activated L. vannamei hemocytes with Illumina HiSeq 2500. The aims of this study were to discover new genes, interrelate signal pathways of UPR, and to gain better understanding of the environmental stress response in …

Transcriptome analysis of the unfolded protein response in ...

Transcriptome and Expression Profiling Analysis of the ...

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In this study, a transcriptome library of the hemocytes isolated from V. parahaemolyticus-infected crabs was constructed for massive parallel mRNA sequencing. Using the de novo transcriptome assembly software, we ultimately obtained a transcriptome database containing 81,709 unigenes. Quantitative gene expression analysis was performed using ...

Transcriptome and Expression Profiling Analysis of the ...

Transcriptome and Expression Profiling Analysis of the ...

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Transcriptome profile of mud crab S.paramamosain. Total RNA was extracted from the hemocytes of crabs at several time points, including 0, 12, 24, and 48 h after V. parahaemolyticus infection. Equal quantities of RNA were mixed together to construct a cDNA library for Illumina sequencing, which yielded a total of 62,004,374 reads.

Transcriptome and Expression Profiling Analysis of the ...

Sequencing and De NovoAnalysis of the Hemocytes ...

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Sequencing and De NovoAnalysis of the Hemocytes Transcriptome inLitopenaeus vannamei White Spot Syndrome Virus Infection Shuxia Xue2, Yichen Liu1, Yichen Zhang1, Yan …

Sequencing and De NovoAnalysis of the Hemocytes ...

Transcriptome analysis of the unfolded protein response in ...

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Request PDF on ResearchGate | Transcriptome analysis of the unfolded protein response in hemocytes of Litopenaeus vannamei | In this study, Litopenaeus vannamei was injected with double-stranded ...

Transcriptome analysis of the unfolded protein response in ...

RNA-Seq Study of Microbially Induced Hemocyte Transcripts ...

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infection [8,21±23]. In this study we applied the technique of Illumina RNA-seq digital expression profiling to construct a hemocyte-specific de novo transcriptome, comprising >22,000 putative transcripts, against which we profiled the in vivo antimicrobial responses of hemocytes infected with

RNA-Seq Study of Microbially Induced Hemocyte Transcripts ...

RNA-Seq Study of Microbially Induced Hemocyte Transcripts ...

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In this study we applied the technique of Illumina RNA-seq digital expression profiling to construct a hemocyte-specific de novo transcriptome, comprising >22,000 putative transcripts, against which we profiled the in vivo antimicrobial responses of hemocytes infected with bacterial or fungal elicitors within the first hours of infection.

RNA-Seq Study of Microbially Induced Hemocyte Transcripts ...

Deep transcriptome sequencing of Pecten maximus hemocytes ...

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Contigs showing a e-value lower than 1 E-10 were genes as well as all the transcripts that were represented on the manually checked and, when possible, prolonged at 50 and 30 whole hemocytes transcriptome were then used to define a “gene ends by overlapping P. maximus sequences which were previ- list” and a “background” in the ...

Deep transcriptome sequencing of Pecten maximus hemocytes ...

RNA-Seq in Mytilus galloprovincialis: comparative ...

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9/24/2015 · Using almost 400 million reads, we described the transcriptome and expression profiles of M. galloprovincialis tissues and the generated data has enriched the genomic resources available for this organism. This study represents the first RNA-Seq approach applied in bivalves to describe and analyze tissue-specific transcriptomes.

RNA-Seq in Mytilus galloprovincialis: comparative ...

Genome-wide transcriptomic profiling of ... - BMC Genomics

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6/5/2009 · The hemocyte transcriptome. We used our previously published "high injection/recovery" method to isolate hemocyte samples with little or no contamination by other cell types from adult female mosquitoes [].This approach results in recovery of the three types of hemocytes- granulocytes, oenocytoids and prohemocytes – produced by An. gambiae that are distinguished from one another …

Genome-wide transcriptomic profiling of ... - BMC Genomics

A Transcriptome Analysis Suggests Apoptosis Related ...

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This study will facilitate the identification of immunosuppression-related genes and also improves our understanding of molecular mechanisms underlying polydnavirus-parasitoid-host interaction. Microplitis bicoloratus parasitism induction of apoptotic DNA fragmentation of …

A Transcriptome Analysis Suggests Apoptosis Related ...

Sequencing and De Novo Analysis of the Hemocytes ...

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Transcriptome Analysis of Litopenaeus vannamei in Response to White Spot Syndrome Virus Infection: Genesis of Hematopoietic Tissue and Its Relation with Hemocytes of Litopenaeus Vannamei (Boone, 1931) (Crustacea: Decapoda) SNP Discovery in the Transcriptome of White Pacific Shrimp Litopenaeus vannamei by Next Generation Sequencing

Sequencing and De Novo Analysis of the Hemocytes ...

Transcription in mosquito hemocytes in response to ...

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6/5/2009 · Mosquito hemocytes are blood cells that are fundamental for combating systemic infection. A study published in BMC Genomics shows that hemocyte gene transcription in response to immune challenge is pathogen-specific and reaffirms the primary role of these cells in immunity.

Transcription in mosquito hemocytes in response to ...

De Novo Assembly of the Sea Cucumber Apostichopus ...

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Background De novo transcriptome sequencing is a robust method of predicting miRNA target genes, especially samples without reference genomes. Differentially expressed miRNAs have been previously identified in hemocytes collected from healthy skin and from skin affected by skin ulceration syndrome (SUS) in Apostichopusjaponicus. Target identification for these differentially expressed miRNAs ...

De Novo Assembly of the Sea Cucumber Apostichopus ...

Insects | Free Full-Text | RNA-Seq Study of Microbially ...

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Biological Control of Insects Research Laboratory, USDA Agricultural Research Service, 1503 S. Providence Road, Columbia, MO 65203, USA Author to whom correspondence should be addressed. The larval H. virescens de novo exome assembly contained a …

Insects | Free Full-Text | RNA-Seq Study of Microbially ...

japonicus Pengjuan Zhang , Chenghua Li Hemocytes ...

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Conclusion: This study demonstrates the feasibility of identifying miRNA targets by transcriptome analysis. The DGE assembly data represent a substantial increase in the genomic resources available for this species and will provide insights into the gene expression profile analysis and the miRNAs function annotations of further studies.

japonicus Pengjuan Zhang , Chenghua Li Hemocytes ...

A Transcriptome Analysis Suggests Apoptosis-Related ...

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This study will facilitate the identification of immunosuppression-related genes and also improves our understanding of molecular mechanisms underlying polydnavirus-parasitoid-host interaction. Citation: Li M, Pang Z, Xiao W, Liu X, Zhang Y, et al. (2014) A Transcriptome Analysis Suggests Apoptosis-Related Signaling Pathways in Hemocytes of ...

A Transcriptome Analysis Suggests Apoptosis-Related ...

Transcriptome assembly and expression profiling of ...

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1/20/2016 · In this study, we performed transcriptome sequencing and gene expression analyses of its hepatopancreas with and without Cd treatments. A total of 7.78 G …

Transcriptome assembly and expression profiling of ...
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